PedAgree

version 1.00

IDDN.FR.001.090018.03.R.P.2001.000.31235

A Program for Detecting Autosomal Marker Mendelian Incompatibilities in Pedigree Data

Author: Christine Couillault

christine.couillault@free.fr

Ceph families

Fondation Jean Dausset CEPH
Linux: 800 Mhz, RAM 128 M
Ceph data:
Number of records : 899
Number of pedigrees : 65
Size of the largest pedigree : 21

Run time (second) with Ceph families
differences between PedAgree and Unknown
Chromosome
(% genotyped)
Number of markers
(Number of alleles)
PedAgree unknown
(fastlink 4.1P)
Total   5.08 572.02 (9 min 1/2)
1
(14)
19
(7 8 7 8 6 7 14 8 4 10 6 6 13 7 8 7 9 8 9)
0.23 31.32
2
(32)
19
(2 3 2 2 2 7 7 3 2 7 8 4 7 8 10 7 10 10 8)
0.23 15.00
3
(42)
19
(2 2 2 2 2 2 4 3 2 6 2 2 2 2 2 2 2 2 2)
0.22 0.82
4
(40)
19
(3 2 4 11 4 2 2 2 2 2 2 4 2 6 8 2 2 2 10)
0.24 7.10
5
(57)
19
(4 2 3 2 2 2 3 8 4 4 4 2 2 2 2 4 4 12 10)
0.23 7.57
6
(15)
19
(4 5 6 11 6 8 9 5 10 8 7 11 6 11 10 7 5 6 6)
0.23 23.33
7
(14)
19
(3 6 6 10 13 7 10 5 7 7 10 6 6 7 7 5 20 6 4)
0.23 55.29
8
(15)
19
(3 6 5 10 10 7 3 6 6 7 9 6 4 5 6 6 8 10 8)
0.23 15.49
9
(15)
19
(9 7 8 11 7 15 8 9 10 9 6 8 10 7 5 7 8 10 6)
0.23 37.18
10
(15)
19
(8 7 8 6 2 12 4 6 8 6 4 4 8 12 8 5 3 5 3)
0.23 17.93
11
(14)
19
(4 5 9 9 5 9 7 8 8 10 6 8 7 5 6 8 7 7 9)
0.23 17.60
12
(15)
19
(7 13 15 7 9 12 11 9 12 4 11 8 11 15 6 8 9 8 18)
0.23 85.92
13
(17)
19
(6 10 13 7 8 7 6 8 8 10 5 9 7 11 5 8 10 5 3)
0.23 26.28
14
(15)
19
(12 8 9 8 8 6 6 8 6 9 4 5 6 8 9 6 13 3 4)
0.23 24.37
15
(15)
19
(5 6 8 9 6 7 7 11 9 5 6 5 7 7 8 7 5 4 3)
0.23 14.47
16
(14)
19
(3 8 12 10 8 9 8 11 3 5 8 5 10 6 6 5 4 7 10)
0.23 24.35
17
(14)
19
(4 9 9 8 7 12 7 8 10 6 5 9 5 8 7 8 15 6 5)
0.24 31.76
18
(15)
19
(5 9 4 4 10 6 12 6 6 9 6 3 6 7 6 4 9 6 7)
0.23 16.98
19
(14)
19
(8 5 7 6 6 7 5 8 8 5 6 8 6 7 5 9 10 13 10)
0.23 21.95
20
(50)
19
(8 12 12 9 13 6 8 8 5 7 12 16 11 15 8 10 13 15 5)
0.23 48.39
21
(14)
19
(7 11 8 6 5 7 8 8 5 7 8 7 13 12 8 9 6 8 5)
0.24 27.46
22
(14)
19
(7 2 8 9 7 3 7 8 9 11 4 7 11 8 8 8 7 8 8)
0.23 21.46