PedAgree

version 1.00

IDDN.FR.001.090018.03.R.P.2001.000.31235

A Program for Detecting Autosomal Marker Mendelian Incompatibilities in Pedigree Data

Author: Christine Couillault

christine.couillault@free.fr

ECRAF data

POLYARTHRITE RHUMATOIDE / ECRAF
Linux: 800 Mhz, RAM 128 M
ECRAF data:
Number of records : 583
Number of pedigrees : 90
Size of the largest pedigree : 13

Run time (second) with ECRAF data
differences between PedAgree and Unknown
Chromosome
(% genotyped)
Number of markers
(Number of alleles)
PedAgree unknown
(fastlink 4.1P)
Total   2.69 83.01 (1 min 23)
1
(71)
18
(13 10 17 12 9 8 9 12 14 10 12 5 12 15 7 8 11 5)
0.18 2.10
2
(71)
18
(7 7 10 16 12 13 15 11 11 14 10 14 9 17 13 12 9 5)
0.16 4.28
3
(72)
14
(9 9 12 7 17 13 17 6 18 12 15 10 15 10)
0.13 2.99
4
(68)
13
(11 9 9 9 11 14 10 10 10 11 10 10 9)
0.11 2.19
5
(71)
12
(9 12 9 9 11 10 9 11 10 14 13 7)
0.11 1.35
6
(67)
15
( 9 6 11 8 14 13 13 15 8 8 16 12 12 9 11)
0.14 2.68
7
(68)
21
(12 10 13 8 15 19 8 11 5 8 10 14 13 6 11 12 11 12 11 21 7)
0.18 7.28
8
(63)
18
(12 9 9 10 7 11 11 13 8 9 11 9 17 8 11 11 10 13)
0.16 4.03
9
(67)
15
(9 16 15 10 10 10 7 14 14 14 12 11 8 6 10)
0.13 3.50
10
(67)
14
(12 6 13 10 10 12 17 5 14 12 11 11 12 7)
0.13 4.30
11
(59)
14
(24 8 12 10 7 8 11 11 7 6 17 16 8 8)
0.12 10.44
12
(56)
13
(14 15 15 11 10 9 12 11 11 24 7 12 9 )
0.11 7.71
13
(72)
9
(9 9 6 14 10 15 8 12 6)
0.08 1.48
14
(62)
18
(11 8 13 10 10 11 11 6 11 13 14 10 10 12 11 10 16 12)
0.15 4.61
15
(66)
12
(10 17 8 14 11 13 18 9 18 25 9 11)
0.12 5.95
16
(64)
14
(13 16 10 10 10 9 7 10 9 13 16 8 23 13)
0.12 5.09
17
(70)
12
(6 11 11 11 8 16 10 10 10 13 8 14)
0.11 2.24
18
(71)
13
(10 20 7 10 9 13 14 11 13 12 6 8 16)
0.12 3.42
19
(72)
9
(9 7 12 12 6 13 14 10 7)
0.08 0.96
20
(67)
10
(8 14 10 12 8 8 12 10 15 12)
0.10 1.73
21
(67)
10
(14 8 13 10 10 12 15 14 14 16)
0.09 3.42
22
(71)
7
(9 11 11 13 17 9 10)
0.06 1.26